Pharmacological Inhibition of PPARy Boosts HIV Reactivation and Th17 Effector Functions, while Preventing Progeny Virion Release and de novo Infection
Main Article Content
Abstract
The frequency and functions of Th17-polarized CCR6+RORyt+CD4+ T cells are rapidly compromised upon HIV infection and are not restored with long-term viral suppressive antiretroviral therapy (ART). In line with this, Th17 cells represent selective HIV-1 infection targets mainly at mucosal sites, with long-lived Th17 subsets carrying replication-competent HIV-DNA during ART. Therefore, novel Th17-specific therapeutic interventions are needed as a supplement of ART to reach the goal of HIV remission/cure. Th17 cells express high levels of peroxisome proliferator-activated receptor gamma (PPARy), a transcriptional factor that represses the transcription of the HIV provirus and the rorc gene, which encodes for the Th17-specific master regulator RORyt/RORC2. Thus, we hypothesized that the pharmacological inhibition of PPARy will facilitate HIV reservoir reactivation while enhancing Th17 effector functions. Consistent with this prediction, the PPARy antagonist T0070907 significantly increased HIV transcription (cell-associated HIV-RNA) and RORyt-mediated Th17 effector functions (IL-17A). Unexpectedly, the PPARy antagonism limited HIV outgrowth from cells of ART-treated people living with HIV (PLWH), as well as HIV replication in vitro. Mechanistically, PPARy inhibition in CCR6+CD4+ T cells induced the upregulation of transcripts linked to Th17-polarisation (RORyt, STAT3, BCL6 IL-17A/F, IL-21) and HIV transcription (NCOA1-3, CDK9, HTATIP2). Interestingly, several transcripts involved in HIV-restriction were upregulated (Caveolin-1, TRIM22, TRIM5α, BST2, miR-29), whereas HIV permissiveness transcripts were downregulated (CCR5, furin), consistent with the decrease in HIV outgrowth/replication. Finally, PPARy inhibition increased intracellular HIV-p24 expression and prevented BST-2 downregulation on infected T cells, suggesting that progeny virion release is restricted by BST-2-dependent mechanisms. These results provide a strong rationale for considering PPARy antagonism as a novel strategy for HIV-reservoir purging and restoring Th17-mediated mucosal immunity in ART-treated PLWH.
Downloads
Article Details
This work is licensed under a Creative Commons Attribution 4.0 International License.
Pathogens and Immunity abides by Creative Commons BY 4.0:
http://creativecommons.org/licenses/by/4.0/
This license lets others distribute, remix, tweak, and build upon your work for any lawful purpose, even commercially, as long as they credit you for the original creation. This is the most accommodating of licenses offered. Recommended for maximum dissemination and use of licensed materials. The authors maintain copyright of their materal.
*Due to a template error on our pdfs, articles published from May 20, 2016 to June 24, 2022 incorrectly state the copyright is held by Pathogens and Immunity. Copyright of all articles is held by the authors of each article as noted in the above copyright policy.
References
1. Barre-Sinoussi F, Ross AL, Delfraissy JF. Past, present and future: 30 years of HIV research. Nature reviews Microbiology. 2013;11(12):877-83. Epub 2013/10/29. doi: 10.1038/nrmicro3132. PubMed PMID: 24162027.
2. Martin AR, Siliciano RF. Progress Toward HIV Eradication: Case Reports, Current Efforts, and the Challenges Associated with Cure. Annual review of medicine. 2016;67:215-28. Epub 2015/11/04. doi: 10.1146/annurev-med-011514-023043. PubMed PMID: 26526767.
3. Deeks SG, Lewin SR, Ross AL, Ananworanich J, Benkirane M, Cannon P, Chomont N, Douek D, Lifson JD, Lo YR, Kuritzkes D, Margolis D, Mellors J, Persaud D, Tucker JD, Barre-Sinoussi F, International ASTaCWG, Alter G, Auerbach J, Autran B, Barouch DH, Behrens G, Cavazzana M, Chen Z, Cohen EA, Corbelli GM, Eholie S, Eyal N, Fidler S, Garcia L, Grossman C, Henderson G, Henrich TJ, Jefferys R, Kiem HP, McCune J, Moodley K, Newman PA, Nijhuis M, Nsubuga MS, Ott M, Palmer S, Richman D, Saez-Cirion A, Sharp M, Siliciano J, Silvestri G, Singh J, Spire B, Taylor J, Tolstrup M, Valente S, van Lunzen J, Walensky R, Wilson I, Zack J. International AIDS Society global scientific strategy: towards an HIV cure 2016. Nature medicine. 2016;22(8):839-50. Epub 2016/07/12. doi: 10.1038/nm.4108. PubMed PMID: 27400264; PMCID: PMC5322797.
4. Chomont N, DaFonseca S, Vandergeeten C, Ancuta P, Sekaly RP. Maintenance of CD4+ T-cell memory and HIV persistence: keeping memory, keeping HIV. Curr Opin HIV AIDS. 2011;6(1):30-6. Epub 2011/01/19. doi: 10.1097/COH.0b013e3283413775. PubMed PMID: 21242891.
5. Sengupta S, Siliciano RF. Targeting the Latent Reservoir for HIV-1. Immunity. 2018;48(5):872-95. Epub 2018/05/17. doi: 10.1016/j.immuni.2018.04.030. PubMed PMID: 29768175; PMCID: PMC6196732.
6. Colby DJ, Trautmann L, Pinyakorn S, Leyre L, Pagliuzza A, Kroon E, Rolland M, Takata H, Buranapraditkun S, Intasan J, Chomchey N, Muir R, Haddad EK, Tovanabutra S, Ubolyam S, Bolton DL, Fullmer BA, Gorelick RJ, Fox L, Crowell TA, Trichavaroj R, O’Connell R, Chomont N, Kim JH, Michael NL, Robb ML, Phanuphak N, Ananworanich J, group RVs. Rapid HIV RNA rebound after antiretroviral treatment interruption in persons durably suppressed in Fiebig I acute HIV infection. Nature medicine. 2018;24(7):923-6. Epub 2018/06/13. doi: 0.1038/s41591-018-0026-61. PubMed PMID: 29892063; PMCID: PMC6092240.
7. El-Far M, Tremblay CL. Gut microbial diversity in HIV infection post combined antiretroviral therapy: a key target for prevention of cardiovascular disease. Curr Opin HIV AIDS. 2018;13(1):38-44. Epub 2017/10/19. doi: 10.1097/COH.0000000000000426. PubMed PMID: 29045253; PMCID: PMC5718258.
8. Paul R. Neurocognitive Phenotyping of HIV in the Era of Antiretroviral Therapy. Curr HIV/AIDS Rep. 2019;16(3):230-5. Epub 2019/06/07. doi: 10.1007/s11904-019-00426-9. PubMed PMID: 31168712; PMCID: PMC6571160.
9. Davenport MP, Khoury DS, Cromer D, Lewin SR, Kelleher AD, Kent SJ. Functional cure of HIV: the scale of the challenge. Nat Rev Immunol. 2019;19(1):45-54. Epub 2018/11/10. doi: 10.1038/s41577-018-0085-4. PubMed PMID: 30410126.
10. Bruner KM, Hosmane NN, Siliciano RF. Towards an HIV-1 cure: measuring the latent reservoir. Trends in microbiology. 2015;23(4):192-203. Epub 2015/03/10. doi: 10.1016/j.tim.2015.01.013. PubMed PMID: 25747663; PMCID: PMC4386620.
11. Kuo HH, Lichterfeld M. Recent progress in understanding HIV reservoirs. Curr Opin HIV AIDS. 2018;13(2):137-42. Epub 2017/12/13. doi: 10.1097/COH.0000000000000441. PubMed PMID: 29232209; PMCID: PMC5806203.
12. Chomont N, El-Far M, Ancuta P, Trautmann L, Procopio FA, Yassine-Diab B, Boucher G, Boulassel MR, Ghattas G, Brenchley JM, Schacker TW, Hill BJ, Douek DC, Routy JP, Haddad EK, Sekaly RP. HIV reservoir size and persistence are driven by T cell survival and homeostatic proliferation. Nature medicine. 2009;15(8):893-900. Epub 2009/06/23. doi: 10.1038/nm.1972. PubMed PMID: 19543283; PMCID: PMC2859814.
13. Clayton KL, Garcia JV, Clements JE, Walker BD. HIV Infection of Macrophages: Implications for Pathogenesis and Cure. Pathog Immun. 2017;2(2):179-92. Epub 2017/07/29. doi: 10.20411/pai.v2i2.204. PubMed PMID: 28752134; PMCID: PMC5526341.
14. Wacleche VS, Landay A, Routy JP, Ancuta P. The Th17 Lineage: From Barrier Surfaces Homeostasis to Autoimmunity, Cancer, and HIV-1 Pathogenesis. Viruses. 2017;9(10). Epub 2017/10/20. doi: 10.3390/v9100303. PubMed PMID: 29048384; PMCID: PMC5691654.
15. Planas D, Routy JP, Ancuta P. New Th17-specific therapeutic strategies for HIV remission. Curr Opin HIV AIDS. 2019;14(2):85-92. Epub 2018/12/14. doi: 10.1097/COH.0000000000000522. PubMed PMID: 30543544.
16. Anderson JL, Khoury G, Fromentin R, Solomon A, Chomont N, Sinclair E, Milush JM, Hartogensis W, Bacchetti P, Roche M, Tumpach C, Gartner M, Pitman MC, Epling CL, Hoh R, Hecht FM, Somsouk M, Cameron PU, Deeks SG, Lewin SR. Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy. J Infect Dis. 2020;221(5):744-55. Epub 2019/12/05. doi: 10.1093/infdis/jiz509. PubMed PMID: 31796951; PMCID: PMC7026892.
17. Bernier A, Cleret-Buhot A, Zhang Y, Goulet JP, Monteiro P, Gosselin A, DaFonseca S, Wacleche VS, Jenabian MA, Routy JP, Tremblay C, Ancuta P. Transcriptional profiling reveals molecular signatures associated with HIV permissiveness in Th1Th17 cells and identifies peroxisome proliferator-activated receptor gamma as an intrinsic negative regulator of viral replication. Retrovirology. 2013;10:160. Epub 2013/12/24. doi: 10.1186/1742-4690-10-160. PubMed PMID: 24359430; PMCID: PMC3898812.
18. Cleret-Buhot A, Zhang Y, Planas D, Goulet JP, Monteiro P, Gosselin A, Wacleche VS, Tremblay CL, Jenabian MA, Routy JP, El-Far M, Chomont N, Haddad EK, Sekaly RP, Ancuta P. Identification of novel HIV-1 dependency factors in primary CCR4(+)CCR6(+)Th17 cells via a genome-wide transcriptional approach. Retrovirology. 2015;12(1):102. Epub 2015/12/15. doi: 10.1186/s12977-015-0226-9. PubMed PMID: 26654242; PMCID: PMC4676116.
19. Wacleche VS, Goulet JP, Gosselin A, Monteiro P, Soudeyns H, Fromentin R, Jenabian MA, Vartanian S, Deeks SG, Chomont N, Routy JP, Ancuta P. New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy. Retrovirology. 2016;13(1):59. Epub 2016/08/25. doi: 10.1186/s12977-016-0293-6. PubMed PMID: 27553844; PMCID: PMC4995622.
20. Planas D, Zhang Y, Monteiro P, Goulet JP, Gosselin A, Grandvaux N, Hope TJ, Fassati A, Routy JP, Ancuta P. HIV-1 selectively targets gut-homing CCR6+CD4+ T cells via mTOR-dependent mechanisms. JCI Insight. 2017;2(15). Epub 2017/08/05. doi: 10.1172/jci.insight.93230. PubMed PMID: 28768913; PMCID: PMC5543920.
21. Daynes RA, Jones DC. Emerging roles of PPARs in inflammation and immunity. Nat Rev Immunol. 2002;2(10):748-59. Epub 2002/10/03. doi: 10.1038/nri912. PubMed PMID: 12360213.
22. Potula R, Ramirez SH, Knipe B, Leibhart J, Schall K, Heilman D, Morsey B, Mercer A, Papugani A, Dou H, Persidsky Y. Peroxisome proliferator-activated receptor-gamma activation suppresses HIV-1 replication in an animal model of encephalitis. AIDS. 2008;22(13):1539-49. Epub 2008/08/02. doi: 10.1097/QAD.0b013e3283081e08. PubMed PMID: 18670212; PMCID: PMC2688810.
23. Skolnik PR, Rabbi MF, Mathys JM, Greenberg AS. Stimulation of peroxisome proliferator-activated receptors alpha and gamma blocks HIV-1 replication and TNFalpha production in acutely infected primary blood cells, chronically infected U1 cells, and alveolar macrophages from HIV-infected subjects. J Acquir Immune Defic Syndr. 2002;31(1):1-10. Epub 2002/09/28. doi: 10.1097/00126334-200209010-00001. PubMed PMID: 12352144.
24. Hanley TM, Blay Puryear W, Gummuluru S, Viglianti GA. PPARgamma and LXR signaling inhibit dendritic cell-mediated HIV-1 capture and trans-infection. PLoS Pathog. 2010;6:e1000981. Epub 2010/07/10. doi: 10.1371/journal.ppat.1000981. PubMed PMID: 20617179; PMCID: PMC2895661.
25. Chandra V, Huang P, Hamuro Y, Raghuram S, Wang Y, Burris TP, Rastinejad F. Structure of the intact PPAR-gamma-RXR- nuclear receptor complex on DNA. Nature. 2008;456(7220):350-6. Epub 2008/12/02. doi: 10.1038/nature07413. PubMed PMID: 19043829; PMCID: PMC2743566.
26. Ahmadian M, Suh JM, Hah N, Liddle C, Atkins AR, Downes M, Evans RM. PPARgamma signaling and metabolism: the good, the bad and the future. Nature medicine. 2013;19(5):557-66. Epub 2013/05/09. doi: 10.1038/nm.3159. PubMed PMID: 23652116; PMCID: PMC3870016.
27. Glass CK, Saijo K. Nuclear receptor transrepression pathways that regulate inflammation in macrophages and T cells. Nat Rev Immunol. 2010;10(5):365-76. Epub 2010/04/24. doi: 10.1038/nri2748. PubMed PMID: 20414208.
28. Peters JM, Shah YM, Gonzalez FJ. The role of peroxisome proliferator-activated receptors in carcinogenesis and chemoprevention. Nature reviews Cancer. 2012;12(3):181-95. Epub 2012/02/10. doi: 10.1038/nrc3214. PubMed PMID: 22318237; PMCID: PMC3322353.
29. Robinson GA, Waddington KE, Pineda-Torra I, Jury EC. Transcriptional Regulation of T-Cell Lipid Metabolism: Implications for Plasma Membrane Lipid Rafts and T-Cell Function. Front Immunol. 2017;8:1636. Epub 2017/12/12. doi: 10.3389/fimmu.2017.01636. PubMed PMID: 29225604; PMCID: PMC5705553.
30. Angela M, Endo Y, Asou HK, Yamamoto T, Tumes DJ, Tokuyama H, Yokote K, Nakayama T. Fatty acid metabolic reprogramming via mTOR-mediated inductions of PPARgamma directs early activation of T cells. Nat Commun. 2016;7:13683. Epub 2016/12/03. doi: 10.1038/ncomms13683. PubMed PMID: 27901044; PMCID: PMC5141517.
31. Ladias JA. Convergence of multiple nuclear receptor signaling pathways onto the long terminal repeat of human immunodeficiency virus-1. J Biol Chem. 1994;269(8):5944-51. Epub 1994/02/25. PubMed PMID: 8119938.
32. Klotz L, Knolle P. Nuclear receptors: TH17 cell control from within. FEBS Lett. 2011;585(23):3764-9. Epub 2011/07/13. doi: 10.1016/j.febslet.2011.06.027. PubMed PMID: 21745474.
33. Park HJ, Kim DH, Choi JY, Kim WJ, Kim JY, Senejani AG, Hwang SS, Kim LK, Tobiasova Z, Lee GR, Craft J, Bothwell AL, Choi JM. PPARgamma negatively regulates T cell activation to prevent follicular helper T cells and germinal center formation. PLoS One. 2014;9(6):e99127. Epub 2014/06/13. doi: 10.1371/journal.pone.0099127. PubMed PMID: 24921943; PMCID: PMC4055678.
34. Klotz L, Burgdorf S, Dani I, Saijo K, Flossdorf J, Hucke S, Alferink J, Nowak N, Beyer M, Mayer G, Langhans B, Klockgether T, Waisman A, Eberl G, Schultze J, Famulok M, Kolanus W, Glass C, Kurts C, Knolle PA. The nuclear receptor PPAR gamma selectively inhibits Th17 differentiation in a T cell-intrinsic fashion and suppresses CNS autoimmunity. J Exp Med. 2009;206(10):2079-89. Epub 2009/09/10. doi: 10.1084/jem.20082771. PubMed PMID: 19737866; PMCID: PMC2757877.
35. Hadigan C. Peroxisome proliferator-activated receptor gamma agonists and the treatment of HIV-associated lipoatrophy: unraveling the molecular mechanism of their shortcomings. J Infect Dis. 2008;198(12):1729-31. Epub 2008/10/29. doi: 10.1086/593180. PubMed PMID: 18954262.
36. Hadigan C, Mazza S, Crum D, Grinspoon S. Rosiglitazone increases small dense low-density lipoprotein concentration and decreases high-density lipoprotein particle size in HIV-infected patients. AIDS. 2007;21(18):2543-6. Epub 2007/11/21. doi: 10.1097/QAD.0b013e3282f25123. PubMed PMID: 18025896; PMCID: PMC4391618.
37. Mulligan K, Yang Y, Wininger DA, Koletar SL, Parker RA, Alston-Smith BL, Schouten JT, Fielding RA, Basar MT, Grinspoon S. Effects of metformin and rosiglitazone in HIV-infected patients with hyperinsulinemia and elevated waist/hip ratio. AIDS. 2007;21(1):47-57. Epub 2006/12/07. doi: 10.1097/QAD.0b013e328011220e. PubMed PMID: 17148967.
38. Leung V, Chiu YL, Kotler DP, Albu J, Zhu YS, Ham K, Engelson ES, Hammad H, Christos P, Donovan DS, Ginsberg HN, Glesby MJ. Effect of Recombinant Human Growth Hormone and Rosiglitazone for HIV-Associated Abdominal Fat Accumulation on Adiponectin and other Markers of Inflammation. HIV Clin Trials. 2016;17(2):55-62. Epub 2016/04/15. doi: 10.1080/15284336.2015.1126424. PubMed PMID: 27077672; PMCID: PMC4941209.
39. Tungsiripat M, El-Bejjani D, Rizk N, Dogra V, O’Riordan MA, Ross AC, Hileman C, Storer N, Harrill D, McComsey GA. Carotid intima media thickness, inflammatory markers, and endothelial activation markers in HIV Patients with lipoatrophy increased at 48 weeks regardless of use of rosiglitazone or placebo. AIDS Res Hum Retroviruses. 2011;27(3):295-302. Epub 2010/10/26. doi: 10.1089/aid.2010.0187. PubMed PMID: 20969457; PMCID: PMC3064528.
40. Prost S, Le Dantec M, Auge S, Le Grand R, Derdouch S, Auregan G, Deglon N, Relouzat F, Aubertin AM, Maillere B, Dusanter-Fourt I, Kirszenbaum M. Human and simian immunodeficiency viruses deregulate early hematopoiesis through a Nef/PPARgamma/STAT5 signaling pathway in macaques. J Clin Invest. 2008;118(5):1765-75. Epub 2008/04/24. doi: 10.1172/JCI33037. PubMed PMID: 18431514; PMCID: PMC2323187.
41. Kirchhoff F, Silvestri G. Is Nef the elusive cause of HIV-associated hematopoietic dysfunction? J Clin Invest. 2008;118(5):1622-5. Epub 2008/04/24. doi: 10.1172/JCI35487. PubMed PMID: 18431512; PMCID: PMC2323195.
42. Margolis DM, Archin NM. Proviral Latency, Persistent Human Immunodeficiency Virus Infection, and the Development of Latency Reversing Agents. J Infect Dis. 2017;215(suppl_3):S111-S8. Epub 2017/05/19. doi: 10.1093/infdis/jiw618. PubMed PMID: 28520964; PMCID: PMC5410986.
43. Kim Y, Anderson JL, Lewin SR. Getting the “Kill” into “Shock and Kill”: Strategies to Eliminate Latent HIV. Cell Host Microbe. 2018;23(1):14-26. Epub 2018/01/13. doi: 10.1016/j.chom.2017.12.004. PubMed PMID: 29324227; PMCID: PMC5990418.
44. Adoro S, Cubillos-Ruiz JR, Chen X, Deruaz M, Vrbanac VD, Song M, Park S, Murooka TT, Dudek TE, Luster AD, Tager AM, Streeck H, Bowman B, Walker BD, Kwon DS, Lazarevic V, Glimcher LH. IL-21 induces antiviral microRNA-29 in CD4 T cells to limit HIV-1 infection. Nat Commun. 2015;6:7562. Epub 2015/06/26. doi: 10.1038/ncomms8562. PubMed PMID: 26108174; PMCID: PMC4481879.
45. Micci L, Ryan ES, Fromentin R, Bosinger SE, Harper JL, He T, Paganini S, Easley KA, Chahroudi A, Benne C, Gumber S, McGary CS, Rogers KA, Deleage C, Lucero C, Byrareddy SN, Apetrei C, Estes JD, Lifson JD, Piatak M, Jr., Chomont N, Villinger F, Silvestri G, Brenchley JM, Paiardini M. Interleukin-21 combined with ART reduces inflammation and viral reservoir in SIV-infected macaques. J Clin Invest. 2015;125(12):4497-513. Epub 2015/11/10. doi: 10.1172/JCI81400. PubMed PMID: 26551680; PMCID: PMC4665780.
46. Pallikkuth S, Micci L, Ende ZS, Iriele RI, Cervasi B, Lawson B, McGary CS, Rogers KA, Else JG, Silvestri G, Easley K, Estes JD, Villinger F, Pahwa S, Paiardini M. Maintenance of intestinal Th17 cells and reduced microbial translocation in SIV-infected rhesus macaques treated with interleukin (IL)-21. PLoS Pathog. 2013;9(7):e1003471. Epub 2013/07/16. doi: 10.1371/journal.ppat.1003471. PubMed PMID: 23853592; PMCID: PMC3701718.
47. Vandergeeten C, Fromentin R, DaFonseca S, Lawani MB, Sereti I, Lederman MM, Ramgopal M, Routy JP, Sekaly RP, Chomont N. Interleukin-7 promotes HIV persistence during antiretroviral therapy. Blood. 2013;121(21):4321-9. Epub 2013/04/17. doi: 10.1182/blood-2012-11-465625. PubMed PMID: 23589672; PMCID: PMC3663425.
48. Ochsenbauer C, Edmonds TG, Ding H, Keele BF, Decker J, Salazar MG, Salazar-Gonzalez JF, Shattock R, Haynes BF, Shaw GM, Hahn BH, Kappes JC. Generation of transmitted/founder HIV-1 infectious molecular clones and characterization of their replication capacity in CD4 T lymphocytes and monocyte-derived macrophages. J Virol. 2012;86(5):2715-28. Epub 2011/12/23. doi: 10.1128/JVI.06157-11. PubMed PMID: 22190722; PMCID: PMC3302286.
49. Ancuta P, Kunstman KJ, Autissier P, Zaman T, Stone D, Wolinsky SM, Gabuzda D. CD16+ monocytes exposed to HIV promote highly efficient viral replication upon differentiation into macrophages and interaction with T cells. Virology. 2006;344(2):267-76. Epub 2005/11/25. doi: XXX10.1016/j.virol.2005.10.027. PubMed PMID: 16305804.
50. Bray NL, Pimentel H, Melsted P, Pachter L. Near-optimal probabilistic RNA-seq quantification. Nat Biotechnol. 2016;34(5):525-7. Epub 2016/04/05. doi: 10.1038/nbt.3519. PubMed PMID: 27043002.
51. Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, Smyth GK. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 2015;43(7):e47. Epub 2015/01/22. doi: 10.1093/nar/gkv007. PubMed PMID: 25605792; PMCID: PMC4402510.
52. Hanzelmann S, Castelo R, Guinney J. GSVA: gene set variation analysis for microarray and RNA-seq data. BMC Bioinformatics. 2013;14:7. Epub 2013/01/18. doi: 10.1186/1471-2105-14-7. PubMed PMID: 23323831; PMCID: PMC3618321.
53. Lee G, Elwood F, McNally J, Weiszmann J, Lindstrom M, Amaral K, Nakamura M, Miao S, Cao P, Learned RM, Chen JL, Li Y. T0070907, a selective ligand for peroxisome proliferator-activated receptor gamma, functions as an antagonist of biochemical and cellular activities. J Biol Chem. 2002;277(22):19649-57. Epub 2002/03/06. doi: 10.1074/jbc.M200743200. PubMed PMID: 11877444.
54. Hayes MM, Lane BR, King SR, Markovitz DM, Coffey MJ. Peroxisome proliferator-activated receptor gamma agonists inhibit HIV-1 replication in macrophages by transcriptional and post-transcriptional effects. J Biol Chem. 2002;277(19):16913-9. Epub 2002/02/16. doi: 10.1074/jbc.M200875200. PubMed PMID: 11847231.
55. Joseph SB, Swanstrom R, Kashuba AD, Cohen MS. Bottlenecks in HIV-1 transmission: insights from the study of founder viruses. Nature reviews Microbiology. 2015;13(7):414-25. Epub 2015/06/09. doi: 10.1038/nrmicro3471. PubMed PMID: 26052661; PMCID: PMC4793885.
56. Ortega PAS, Saulle I, Mercurio V, Ibba SV, Lori EM, Fenizia C, Masetti M, Trabattoni D, Caputo SL, Vichi F, Mazzotta F, Clerici M, Biasin M. Interleukin 21 (IL-21)/microRNA-29 (miR-29) axis is associated with natural resistance to HIV-1 infection. AIDS. 2018;32(17):2453-61. Epub 2018/07/14. doi: 10.1097/QAD.0000000000001938. PubMed PMID: 30005016.
57. Ahluwalia JK, Khan SZ, Soni K, Rawat P, Gupta A, Hariharan M, Scaria V, Lalwani M, Pillai B, Mitra D, Brahmachari SK. Human cellular microRNA hsa-miR-29a interferes with viral nef protein expression and HIV-1 replication. Retrovirology. 2008;5:117. Epub 2008/12/24. doi: 10.1186/1742-4690-5-117. PubMed PMID: 19102781; PMCID: PMC2635386.
58. Crotty S. T Follicular Helper Cell Biology: A Decade of Discovery and Diseases. Immunity. 2019;50(5):1132-48. Epub 2019/05/23. doi: 10.1016/j.immuni.2019.04.011. PubMed PMID: 31117010; PMCID: PMC6532429.
59. Perez-Caballero D, Zang T, Ebrahimi A, McNatt MW, Gregory DA, Johnson MC, Bieniasz PD. Tetherin inhibits HIV-1 release by directly tethering virions to cells. Cell. 2009;139(3):499-511. Epub 2009/11/03. doi: 10.1016/j.cell.2009.08.039. PubMed PMID: 19879838; PMCID: PMC2844890.
60. Neil SJ, Zang T, Bieniasz PD. Tetherin inhibits retrovirus release and is antagonized by HIV-1 Vpu. Nature. 2008;451(7177):425-30. Epub 2008/01/18. doi: 10.1038/nature06553. PubMed PMID: 18200009.
61. Dube M, Paquay C, Roy BB, Bego MG, Mercier J, Cohen EA. HIV-1 Vpu antagonizes BST-2 by interfering mainly with the trafficking of newly synthesized BST-2 to the cell surface. Traffic. 2011;12(12):1714-29. Epub 2011/09/10. doi: 10.1111/j.1600-0854.2011.01277.x. PubMed PMID: 21902775; PMCID: PMC3955191.
62. Pardons M, Baxter AE, Massanella M, Pagliuzza A, Fromentin R, Dufour C, Leyre L, Routy JP, Kaufmann DE, Chomont N. Single-cell characterization and quantification of translation-competent viral reservoirs in treated and untreated HIV infection. PLoS Pathog. 2019;15(2):e1007619. Epub 2019/02/28. doi: 10.1371/journal.ppat.1007619. PubMed PMID: 30811499; PMCID: PMC6411230.
63. Gosselin A, Wiche Salinas TR, Planas D, Wacleche VS, Zhang Y, Fromentin R, Chomont N, Cohen EA, Shacklett B, Mehraj V, Ghali MP, Routy JP, Ancuta P. HIV persists in CCR6+CD4+ T cells from colon and blood during antiretroviral therapy. AIDS. 2017;31(1):35-48. Epub 2016/11/12. doi: 10.1097/QAD.0000000000001309. PubMed PMID: 27835617; PMCID: PMC5131694.
64. Biancotto A, Grivel JC, Gondois-Rey F, Bettendroffer L, Vigne R, Brown S, Margolis LB, Hirsch I. Dual role of prostratin in inhibition of infection and reactivation of human immunodeficiency virus from latency in primary blood lymphocytes and lymphoid tissue. J Virol. 2004;78(19):10507-15. Epub 2004/09/16. doi: 10.1128/JVI.78.19.10507-10515.2004. PubMed PMID: 15367617; PMCID: PMC516376.
65. Laird GM, Bullen CK, Rosenbloom DI, Martin AR, Hill AL, Durand CM, Siliciano JD, Siliciano RF. Ex vivo analysis identifies effective HIV-1 latency-reversing drug combinations. J Clin Invest. 2015;125(5):1901-12. Epub 2015/03/31. doi: 10.1172/JCI80142. PubMed PMID: 25822022; PMCID: PMC4463209.
66. Brooks DG, Hamer DH, Arlen PA, Gao L, Bristol G, Kitchen CM, Berger EA, Zack JA. Molecular characterization, reactivation, and depletion of latent HIV. Immunity. 2003;19(3):413-23. Epub 2003/09/23. doi: 10.1016/s1074-7613(03)00236-x. PubMed PMID: 14499116.
67. Korin YD, Brooks DG, Brown S, Korotzer A, Zack JA. Effects of prostratin on T-cell activation and human immunodeficiency virus latency. J Virol. 2002;76(16):8118-23. Epub 2002/07/23. doi: 10.1128/jvi.76.16.8118-8123.2002. PubMed PMID: 12134017; PMCID: PMC155166.
68. Beans EJ, Fournogerakis D, Gauntlett C, Heumann LV, Kramer R, Marsden MD, Murray D, Chun TW, Zack JA, Wender PA. Highly potent, synthetically accessible prostratin analogs induce latent HIV expression in vitro and ex vivo. Proceedings of the National Academy of Sciences of the United States of America. 2013;110(29):11698-703. Epub 2013/07/03. doi: 10.1073/pnas.1302634110. PubMed PMID: 23812750; PMCID: PMC3718093.
69. Rosen ED, Spiegelman BM. PPARgamma : a nuclear regulator of metabolism, differentiation, and cell growth. J Biol Chem. 2001;276(41):37731-4. Epub 2001/07/19. doi: 10.1074/jbc.R100034200. PubMed PMID: 11459852.
70. Liu SY, Aliyari R, Chikere K, Li G, Marsden MD, Smith JK, Pernet O, Guo H, Nusbaum R, Zack JA, Freiberg AN, Su L, Lee B, Cheng G. Interferon-inducible cholesterol-25-hydroxylase broadly inhibits viral entry by production of 25-hydroxycholesterol. Immunity. 2013;38(1):92-105. Epub 2013/01/01. doi: 10.1016/j.immuni.2012.11.005. PubMed PMID: 23273844; PMCID: PMC3698975.
71. Soroosh P, Wu J, Xue X, Song J, Sutton SW, Sablad M, Yu J, Nelen MI, Liu X, Castro G, Luna R, Crawford S, Banie H, Dandridge RA, Deng X, Bittner A, Kuei C, Tootoonchi M, Rozenkrants N, Herman K, Gao J, Yang XV, Sachen K, Ngo K, Fung-Leung WP, Nguyen S, de Leon-Tabaldo A, Blevitt J, Zhang Y, Cummings MD, Rao T, Mani NS, Liu C, McKinnon M, Milla ME, Fourie AM, Sun S. Oxysterols are agonist ligands of RORgammat and drive Th17 cell differentiation. Proceedings of the National Academy of Sciences of the United States of America. 2014;111(33):12163-8. Epub 2014/08/06. doi: 10.1073/pnas.1322807111. PubMed PMID: 25092323; PMCID: PMC4143045.
72. Santori FR, Huang P, van de Pavert SA, Douglass EF, Jr., Leaver DJ, Haubrich BA, Keber R, Lorbek G, Konijn T, Rosales BN, Rozman D, Horvat S, Rahier A, Mebius RE, Rastinejad F, Nes WD, Littman DR. Identification of natural RORgamma ligands that regulate the development of lymphoid cells. Cell metabolism. 2015;21(2):286-98. Epub 2015/02/05. doi: 10.1016/j.cmet.2015.01.004. PubMed PMID: 25651181; PMCID: PMC4317570.
73. Schneider C, Nobs SP, Kurrer M, Rehrauer H, Thiele C, Kopf M. Induction of the nuclear receptor PPAR-gamma by the cytokine GM-CSF is critical for the differentiation of fetal monocytes into alveolar macrophages. Nat Immunol. 2014;15(11):1026-37. Epub 2014/09/30. doi: 10.1038/ni.3005. PubMed PMID: 25263125.
74. Maciolek JA, Pasternak JA, Wilson HL. Metabolism of activated T lymphocytes. Curr Opin Immunol. 2014;27:60-74. Epub 2014/02/22. doi: 10.1016/j.coi.2014.01.006. PubMed PMID: 24556090.
75. Loisel-Meyer S, Swainson L, Craveiro M, Oburoglu L, Mongellaz C, Costa C, Martinez M, Cosset FL, Battini JL, Herzenberg LA, Herzenberg LA, Atkuri KR, Sitbon M, Kinet S, Verhoeyen E, Taylor N. Glut1-mediated glucose transport regulates HIV infection. Proceedings of the National Academy of Sciences of the United States of America. 2012;109(7):2549-54. Epub 2012/02/07. doi: 10.1073/pnas.1121427109. PubMed PMID: 22308487; PMCID: PMC3289356.
76. Hollenbaugh JA, Munger J, Kim B. Metabolite profiles of human immunodeficiency virus infected CD4+ T cells and macrophages using LC-MS/MS analysis. Virology. 2011;415(2):153-9. Epub 2011/05/14. doi: 10.1016/j.virol.2011.04.007. PubMed PMID: 21565377; PMCID: PMC3107887.
77. Valle-Casuso JC, Angin M, Volant S, Passaes C, Monceaux V, Mikhailova A, Bourdic K, Avettand-Fenoel V, Boufassa F, Sitbon M, Lambotte O, Thoulouze MI, Muller-Trutwin M, Chomont N, Saez-Cirion A. Cellular Metabolism Is a Major Determinant of HIV-1 Reservoir Seeding in CD4(+) T Cells and Offers an Opportunity to Tackle Infection. Cell metabolism. 2019;29(3):611-26 e5. Epub 2018/12/26. doi: 10.1016/j.cmet.2018.11.015. PubMed PMID: 30581119.
78. Vignali PDA, Barbi J, Pan F. Metabolic Regulation of T Cell Immunity. Adv Exp Med Biol. 2017;1011:87-130. Epub 2017/09/07. doi: 10.1007/978-94-024-1170-6_2. PubMed PMID: 28875487.
79. Heredia A, Le N, Gartenhaus RB, Sausville E, Medina-Moreno S, Zapata JC, Davis C, Gallo RC, Redfield RR. Targeting of mTOR catalytic site inhibits multiple steps of the HIV-1 lifecycle and suppresses HIV-1 viremia in humanized mice. Proceedings of the National Academy of Sciences of the United States of America. 2015;112(30):9412-7. Epub 2015/07/15. doi: 10.1073/pnas.1511144112. PubMed PMID: 26170311; PMCID: PMC4522811.
80. Besnard E, Hakre S, Kampmann M, Lim HW, Hosmane NN, Martin A, Bassik MC, Verschueren E, Battivelli E, Chan J, Svensson JP, Gramatica A, Conrad RJ, Ott M, Greene WC, Krogan NJ, Siliciano RF, Weissman JS, Verdin E. The mTOR Complex Controls HIV Latency. Cell Host Microbe. 2016;20(6):785-97. Epub 2016/12/16. doi: 10.1016/j.chom.2016.11.001. PubMed PMID: 27978436; PMCID: PMC5354304.
81. Jin S, Liao Q, Chen J, Zhang L, He Q, Zhu H, Zhang X, Xu J. TSC1 and DEPDC5 regulate HIV-1 latency through the mTOR signaling pathway. Emerg Microbes Infect. 2018;7(1):138. Epub 2018/08/09. doi: 10.1038/s41426-018-0139-5. PubMed PMID: 30087333; PMCID: PMC6081400.
82. Hug P, Lin HM, Korte T, Xiao X, Dimitrov DS, Wang JM, Puri A, Blumenthal R. Glycosphingolipids promote entry of a broad range of human immunodeficiency virus type 1 isolates into cell lines expressing CD4, CXCR4, and/or CCR5. J Virol. 2000;74(14):6377-85. Epub 2000/06/23. doi: 10.1128/jvi.74.14.6377-6385.2000. PubMed PMID: 10864648; PMCID: PMC112144.
83. Nguyen DH, Hildreth JE. Evidence for budding of human immunodeficiency virus type 1 selectively from glycolipid-enriched membrane lipid rafts. J Virol. 2000;74(7):3264-72. Epub 2000/03/09. doi: 10.1128/jvi.74.7.3264-3272.2000. PubMed PMID: 10708443; PMCID: PMC111827.
84. Ono A, Freed EO. Plasma membrane rafts play a critical role in HIV-1 assembly and release. Proceedings of the National Academy of Sciences of the United States of America. 2001;98(24):13925-30. Epub 2001/11/22. doi: 10.1073/pnas.241320298. PubMed PMID: 11717449; PMCID: PMC61143.
85. Pais-Correia AM, Sachse M, Guadagnini S, Robbiati V, Lasserre R, Gessain A, Gout O, Alcover A, Thoulouze MI. Biofilm-like extracellular viral assemblies mediate HTLV-1 cell-to-cell transmission at virological synapses. Nature medicine. 2010;16(1):83-9. Epub 2009/12/22. doi: 10.1038/nm.2065. PubMed PMID: 20023636.
86. Thoulouze MI, Alcover A. Can viruses form biofilms? Trends in microbiology. 2011;19(6):257-62. Epub 2011/04/05. doi: 10.1016/j.tim.2011.03.002. PubMed PMID: 21458997.
87. Simon V, Bloch N, Landau NR. Intrinsic host restrictions to HIV-1 and mechanisms of viral escape. Nat Immunol. 2015;16(6):546-53. Epub 2015/05/20. doi: 10.1038/ni.3156. PubMed PMID: 25988886; PMCID: PMC6908429.
88. Goujon C, Moncorge O, Bauby H, Doyle T, Ward CC, Schaller T, Hue S, Barclay WS, Schulz R, Malim MH. Human MX2 is an interferon-induced post-entry inhibitor of HIV-1 infection. Nature. 2013;502(7472):559-62. Epub 2013/09/21. doi: 10.1038/nature12542. PubMed PMID: 24048477; PMCID: PMC3808269.
89. Kane M, Yadav SS, Bitzegeio J, Kutluay SB, Zang T, Wilson SJ, Schoggins JW, Rice CM, Yamashita M, Hatziioannou T, Bieniasz PD. MX2 is an interferon-induced inhibitor of HIV-1 infection. Nature. 2013;502(7472):563-6. Epub 2013/10/15. doi: 10.1038/nature12653. PubMed PMID: 24121441; PMCID: PMC3912734.
90. Shi G, Schwartz O, Compton AA. More than meets the I: the diverse antiviral and cellular functions of interferon-induced transmembrane proteins. Retrovirology. 2017;14(1):53. Epub 2017/11/23. doi: 10.1186/s12977-017-0377-y. PubMed PMID: 29162141; PMCID: PMC5697417.
91. Okumura A, Lu G, Pitha-Rowe I, Pitha PM. Innate antiviral response targets HIV-1 release by the induction of ubiquitin-like protein ISG15. Proceedings of the National Academy of Sciences of the United States of America. 2006;103(5):1440-5. Epub 2006/01/26. doi: 10.1073/pnas.0510518103. PubMed PMID: 16434471; PMCID: PMC1360585.
92. Llano M, Kelly T, Vanegas M, Peretz M, Peterson TE, Simari RD, Poeschla EM. Blockade of human immunodeficiency virus type 1 expression by caveolin-1. J Virol. 2002;76(18):9152-64. Epub 2002/08/21. doi: 10.1128/jvi.76.18.9152-9164.2002. PubMed PMID: 12186899; PMCID: PMC136432.
93. Firrito C, Bertelli C, Vanzo T, Chande A, Pizzato M. SERINC5 as a New Restriction Factor for Human Immunodeficiency Virus and Murine Leukemia Virus. Annu Rev Virol. 2018;5(1):323-40. Epub 2018/09/29. doi: 10.1146/annurev-virology-092917-043308. PubMed PMID: 30265629.
94. Barr SD, Smiley JR, Bushman FD. The interferon response inhibits HIV particle production by induction of TRIM22. PLoS Pathog. 2008;4(2):e1000007. Epub 2008/04/05. doi: 10.1371/journal.ppat.1000007. PubMed PMID: 18389079; PMCID: PMC2279259.
95. Stremlau M, Owens CM, Perron MJ, Kiessling M, Autissier P, Sodroski J. The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys. Nature. 2004;427(6977):848-53. Epub 2004/02/27. doi: 10.1038/nature02343. PubMed PMID: 14985764.
96. Hallenberger S, Bosch V, Angliker H, Shaw E, Klenk HD, Garten W. Inhibition of furin-mediated cleavage activation of HIV-1 glycoprotein gp160. Nature. 1992;360(6402):358-61. Epub 1992/11/26. doi: 10.1038/360358a0. PubMed PMID: 1360148.