Subject Index

Bacteria

Increasing Rates of Fluoroquinolone Resistance in Escherichia coli Blood and Urinary Isolates in Stem Cell Transplant and Hematologic Malignancy Populations [Article]
Christopher G. Hauck, Pearlie P. Chong, Melissa B. Miller, Katarzyna Jamieson, Jason P. Fine, Matthew C. Foster, Thomas C. Shea, David van Duin
Vol. 1, No. 2; doi: 10.20411/pai.v1i2.115 

Fluoroquinolone-Resistant Escherichia coli Infections after Transrectal Biopsy of the Prostate in the Veterans Affairs Healthcare System [Article]
Elie Antoun Saade, Nuntra Suwantara, Trina F. Zabarsky, Brigid Wilson, Curtis J. Donskey
Vol. 1, No. 2; doi: 10.20411/pai.v1i2.123

Elevated Circulating Concentrations of Interferon-Gamma in Latent Tuberculosis Infection [Article]
Moises Arturo Huaman, George S. Deepe, Jr., Carl J. Fichtenbaum
Vol. 1, No. 2; doi: 10.20411/pai.v1i2.149

Elevated Circulating Concentrations of Interferon-Gamma in Latent Tuberculosis Infection [Article]
Moises Arturo Huaman, George S. Deepe, Jr., Carl J. Fichtenbaum
Vol. 1, No. 2; doi: 10.20411/pai.v1i2.149

Clinical Usefulness of Klebsiella Pneumoniae Carbapenemase-Producing K. Pneumoniae Genotyping: The Experience of a Single-Center Epidemic [Article]
Marianna Rossi, Liliane Chatenoud, Egidio Franco Viganò, Anna Maria Peri, Laura Alagna, Simone Bramati, Monica Manenti, Monica Raggi, Annalisa Cavallero, Luca Bisi, Sebastiano Leone, Guglielmo Marco Migliorino, Alessandra Bandera, Andrea Gori
Vol. 1, No. 2; doi: 10.20411/pai.v1i2.109

“Infectious Supercarelessness” in Discussing Antibiotic-Resistant Bacteria [Commentary]
Neil S. Greenspan
Vol. 1, No. 2; doi: 10.20411/pai.v1i2.160 

Clinical Application of Interferon-γ Release Assays for the Prevention of Tuberculosis in Countries with Low Incidence [Review]
Christoph Lange, Anna M. Mandalakas, Barbara Kalsdorf, Claudia M. Denkinger, Martina Sester
Vol. 1, No. 2; doi: 10.20411/pai.v1i2.173

Impact of Tigecycline Versus Other Antibiotics on the Fecal Metabolome and on Colonization Resistance to Clostridium difficile in Mice [Article]
Robin L.P. Jump, David Kraft, Kelly Hurless, Alex Polinkovsky, Curtis J. Donskey
Vol. 2, No. 1; doi: 10.20411/pai.v2i1.159

Celebrating More Than a Century of Research on Antibodies: Affirmation Through Negation via Complex Formation [Commentary]
Neil S. Greenspan
Vol. 2, No. 1; doi: 10.20411/pai.v2i1.198

A Comparison of Molecular Typing Methods Applied to Enterobacter cloacae complex: hsp60 Sequencing, Rep-PCR, and MLST [Article]
Roberto Viau, Lee M. Kiedrowski, Barry N. Kreiswirth, Mark Adams, Federico Perez, Dror Marchaim, Dubert M. Guerrero, Keith S. Kaye, Latania K. Logan, Maria Virginia Villegas, Robert A. Bonomo
Vol. 2, No. 1; doi: 10.20411/pai.v2i1.99

The Immunostimulatory Capacity of Nontypeable Haemophilus influenzae Lipooligosaccharide [Article]
Gabrielle N. Gaultier, Kayla N. Colledanchise, Alaa Alhazmi, Marina Ulanova
Vol. 2, No. 1; doi: 10.20411/pai.v2i1.162

HIV/AIDS

Addressing Future Epidemics: Historical Human Rights Lessons from the AIDS Pandemic [Article]
Ambar Mehta, Thomas C. Quinn
Vol. 1, No. 1; doi: 10.20411/pai.v1i1.60

Nonhuman Primates and Humanized Mice for Studies of HIV-1 Integrase Inhibitors: A Review [Review]
Said A. Hassounah, Thibault Mesplède, Mark A. Wainberg
Vol. 1, No. 1; doi: 10.20411/pai.v1i1.104 

Defining HIV and SIV Reservoirs in Lymphoid Tissues [Article]
Claire Deleage, Stephen W. Wietgrefe, Gregory Del Prete, David R. Morcock, Xing-Pei Hao, Michael Piatak, Jr., Julian Bess, Jodi L. Anderson, Cavan Reilly, Joseph M. McCune, Ashley T. Haase, Jeffrey D. Lifson, Timothy W. Schacker, Jacob D. Estes
Vol. 1, No. 1; doi: 10.20411/pai.v1i1.100

Interferons and HIV Infection: The Good, the Bad, and the Ugly [Commentary]
Netanya Sandler Utay, Daniel C. Douek
Vol. 1, No. 1; doi: 10.20411/pai.v1i1.125

Rosuvastatin Decreases Intestinal Fatty Acid Binding Protein (I-FABP), but does not Alter Zonulin or Lipopolysaccharide Binding Protein (LBP) Levels, in HIV-Infected Subjects on Antiretroviral Therapy [Article]
Nicholas Funderburg, Morgan Boucher, Abdus Sattar, Manjusha Kulkarni, Danielle Labbato, Bruce I. Kinley, Grace A. McComsey
Vol. 1, No. 1; doi: 10.20411/pai.v1i1.124

Use of Dried Blood Spots to Elucidate Full-Length Transmitted/Founder HIV-1 Genomes [Article]
Jesus F. Salazar-Gonzalez, Maria G. Salazar, Damien C. Tully, Colin B. Ogilvie, Gerald H. Learn, Todd M. Allen, Sonya L. Heath, Paul Goepfert, Katharine J. Bar
Vol. 1, No. 1; doi: 10.20411/pai.v1i1.116

A Cure for HIV Infection: “Not in My Lifetime” or “Just Around the Corner”? [Commentary]
Michael M. Lederman, Paula M. Cannon, Judith S. Currier, Carl H. June, Hans-Peter Kiem, Daniel R. Kuritzkes, Sharon R. Lewin, David M. Margolis, Joseph M. McCune, John W. Mellors, Timothy W. Schacker, Rafick P. Sekaly, Pablo Tebas, Bruce D. Walker, Daniel C. Douek
Vol. 1, No. 1; doi: 10.20411/pai.v1i1.133

Intimate Partner Violence is Associated with Increased CD4+ T-Cell Activation Among HIV-Negative High-Risk Women [Article]
Ameeta Shivdas Kalokhe, Chris C. Ibegbu, Surinder P. Kaur, Rama R. Amara, Mary E. Kelley, Carlos del Rio, Rob Stephenson
Vol. 1, No. 1; doi: 10.20411/pai.v1i1.120

Reconstitution of Peripheral T Cells by Tissue-Derived CCR4+ Central Memory Cells Following HIV-1 Antiretroviral Therapy [Article]
Yolanda D. Mahnke, Kipper Fletez-Brant, Irini Sereti, Mario Roedere
Vol. 1, No. 2; doi: 10.20411/pai.v1i2.129 

European Mitochondrial DNA Haplogroups are Associated with Cerebrospinal Fluid Biomarkers of Inflammation in HIV Infection [Article]
David C. Samuels, Asha R. Kallianpur, Ronald J. Ellis, William S. Bush, Scott Letendre, Donald Franklin, Igor Grant, Todd Hulgan
Vol. 1, No. 2; doi: 10.20411/pai.v1i2.156

Diminished CD103 (aEb7) Expression on Resident T cells from the Female Genital Tract of HIV-positive women [Article]
David C. Moylan, Paul A. Goepfert, Mirjam-Colette Kempf, Michael S. Saag, Holly E. Richter, Jiri Mestecky, Steffanie Sabbaj
Vol. 1, No. 2; doi: 10.20411/pai.v1i2.166

HIV/HCV Co-infection, Liver Disease Progression, and Age-Related IGF-1 Decline
Jeffrey Quinn, Jacquie Astemborski, Shruti H. Mehta, Gregory D. Kirk, David L. Thomas, Ashwin Balagopal
Vol. 2, No. 1; doi: 10.20411/pai.v2i1.183

Lower Baseline Germinal Center Activity and Preserved Th1 Immunity are Associated with Hepatitis B Vaccine Response in Treated HIV Infection [Article]
Robert M. Paris, Lucimar G. Milagres, Eirini Moysi, Jason F. Okulicz, Brian K. Agan, Anu Ganesan, Constantinos Petrovas, Richard A. Koup
Vol. 2, No. 1; doi: 10.20411/pai.v2i1.175

Socioeconomic Determinants of Ciprofloxacin-Resistant Shigella Infections in Bangladeshi Children [Article]
Randon J. Gruninger, Russell A. Johnson, Sumon K. Das, Eric J. Nelson, Emily S. Spivak, John R. Contreras, A.S.G. Faruque, Daniel T. Leung
Vol. 2, No. 1; doi: 10.20411/pai.v2i1.174

Association of Anisocytosis with Markers of Immune Activation and Exhaustion in Treated HIV [Article] 
Sadeer G. Al-Kindi, David A. Zidar, Grace A. McComsey, Chris T. Longenecker 
Vol. 2, No. 1; doi: 10.20411/pai.v2i1.199

Confusion in the Study of Immune Reconstitution Inflammatory Syndrome [Review]
Claudia Alvarado-De La Barrera, Gustavo Reyes-Terán
Vol. 2, No. 1; doi: 10.20411/pai.v2i1.195

Immunologic Effects of Maraviroc in HIV-Infected Patients with Severe CD4 Lymphopenia Starting Antiretroviral Therapy: A Sub-Study of the CADIRIS Trial [Article]
Pablo F. Belaunzarán-Zamudio, Livio Azzoni, David H. Canaday, Yanink N. Caro-Vega, Brian Clagget, Mohammed S Rassool, Benigno Rodriguez, Ian Sanne, Irini Sereti, Juan G. Sierra-Madero, Michael M. Lederman
Vol. 2, No. 2; doi: 10.20411/pai.v2i2.181

HIV Infection of Macrophages: Implications for Pathogenesis and Cure [Commentary]
Kiera Leigh Clayton, Victor Garcia, Janice E. Clements, Bruce D. Walker
Vol. 2, No. 2; doi: 10.20411/pai.v2i2.204

Jak Inhibitors Modulate Production of Replication Competent Zika Virus in Human Hofbauer, Trophoblasts, and Neuroblastoma cells [Article]
Christina Gavegnano, Leda C. Bassit, Bryan D. Cox, Hui-Mien Hsiao, Erica L. Johnson, Mehul Suthar, Rana Chakraborty, Raymond F. Schinazi
Vol. 2, No. 2; doi: 10.20411/pai.v2i2.190

Parasites

Epitope Capsid-Incorporation: New Effective Approach for Vaccine Development for Chagas Disease [Article]
Qiana L. Matthews, Anitra L. Farrow, Rachakonda Girish, Linlin Gu, Pius Nde, Alexandre Krendelchtchikov, Siddarth Pratap, Shruti S. Sakhare, Steffanie Sabbaj, Maria F. Lima, Fernando Villalta
Vol. 1, No. 2; doi: 10.20411/pai.v1i2.114

Viruses

Hepatitis Delta Virus Detected in Salivary Glands of Sjögren’s Syndrome Patients and Recapitulates a Sjögren’s Syndrome-Like Phenotype in Vivo [Article]
Melodie L. Weller, Matthew R. Gardener, Zoe C. Bogus, Michael A. Smith, Elisa Astorri, Drew G. Michael, Donald A. Michael, Changyu Zheng, Peter D. Burbelo, Zhennan Lai, Paul A. Wilson, William Swaim, Beverly Handelman, Sandra A. Afione, Michele Bombardieri, John A. Chiorini
Vol. 1, No. 1; doi: 10.20411/pai.v1i1.72

Natural Killer Cell Diversity in Viral Infection: Why and How Much? [Review]
Catherine A. Blish
Vol. 1, No. 1; doi: 10.20411/pai.v1i1.142

Hurdles to the Development of Effective HBV Immunotherapies and HCV Vaccines [Review]
Almudena Torres-Cornejo, Georg M. Lauer
Vol. 2, No. 1; doi: 10.20411/pai.v2i1.201

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